None of these are in any particular order. Just the order they popped into my head as.
TV Shows
1. Animaniacs
2. Teenage Mutant Ninja Turtles (2k3)
3. DuckTales
4. The Muppets Show
5. Darkwing Duck
6. The Looney Tunes Show (the original shorts, not the new one)
7. Teenage Mutant Ninja Turtles (OT)
8. Sonic SATAM
9.Pinky and the Brain
Movie
1. Who Framed Roger Rabbit
2. The Great Mouse Detective
3. Castle in the Sky
4. Wakko's Wish
5. Blazing Saddles
6. Duck Soup
7. Sonic the Hedgehog the Movie (OVA)
8. Castle of Cagliostro
9. Muppet Movie (the first one)
10. Mickey Mouse and the Three Musketeers
11. Emperors New Groove