So I've received my copies of #100 from Rich's website (thanks Rich, they're awesome!) and the included reading order shows the order after the Prey back-up as the following:
U19-20
Through Red Eyes
FCBD: Prelude to Dimension X
#073
Dimension X 01-05
#074-75
Ghostbusters II 01-05
U16-17
Triceratots
#076-77
U18
Mutagen Maintenance
#078
How Woody Spent the Invasion
#079-80
U21-22
Dangerous Waters
Kingdom of Rats prelude
#081-84
U23-24
Nobody Cares
Life at Sea
Macro Donatello
Macro Michelangelo
#085
U25
Bebop & Rocksteady Hit the Road 01-05
#086-88
Macro Leonardo
Macro Raphael
#089-93
FCBD: Casualty of War
#094-95
Shredder in Hell 01-05
#096-100
20/20
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