Just thinking through all the movies and going with what I remember standing out, in TMNT 3 I didn't like the sound of Leo when I first heard him, most of the time I either like or find Leo's voice acceptable/suits Leo, but not here.
Agreed 2k3's Raph sounded like an older heavy smoker
, took getting used to but it didn't really irritate me, that would go to 2K3 Mikey.
Outside of those I liked there are a number that I don't have really strong feelings on, judging them on the tone/version they are fine for the role.
Also not included Rise in my reply as I have only seen about 6 eps and also mutation I think I've seen about 4.