Well Nintendo has always missed the majority of big third party games each gen, its been like that since the N64 days so we're all used to it by now.
But in terms of just Nintendo games:
Mario has Odyssey, 3D All-stars, 3D World, Mario Kart 8, Paper Mario: Origami King, Luigi's Mansion 3, Yoshi's Crafted World, Mario Maker 2, New Super Mario U, and the various sports/party games.
Zelda has Breath of the Wild, Link's Awakening, Hyrule Warriors 1 and Age of Calamity, and more remasters and Breath of the Wild 2 on the way
Pokemon has Sword/Shield and Let's go Pikachu/Eevee
Donkey Kong: Tropical Freeze is on Switch
Animal Crossing, Splatoon 2, Fire Emblem Three Houses, Xenoblade 2, Smash Bros, Pikmin 3, Kirby Star Allies, Bayonetta 1-2, etc.
Only Nintendo franchises not on Switch yet is Metroid but its coming, and besides the current dead franchises like Starfox, F-zero, Kid Icarus and Punchout until Nintendo decides to revive them again.
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